Index

B

build_state_vector() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

C

custom_bed_track() (PyMEGABASE.PyMEGABASE method)

custom_bw_track() (PyMEGABASE.PyMEGABASE method)

D

download_and_process_cell_line_data() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

download_and_process_ref_data() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

E

extra_track() (PyMEGABASE.PyMEGABASE_legacy method)

F

filter_exp() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

G

get_tmatrix() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

M

module PyMEGABASE

P

prediction_all_chrm() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method) prediction_single_chrom() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method) prediction_X() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method) printHeader() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

process_replica() (PyMEGABASE.PyMEGABASE_legacy method) process_replica_bed() (PyMEGABASE.PyMEGABASE method) process_replica_bw() (PyMEGABASE.PyMEGABASE method) PyMEGABASE module PyMEGABASE (class in PyMEGABASE) PyMEGABASE_legacy (class in PyMEGABASE)

T

test_set() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method) training() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

training_set_up() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)

W

write_bed() (PyMEGABASE.PyMEGABASE method) (PyMEGABASE.PyMEGABASE_legacy method)